番茄(Solanum lycopersicumVOZ基因的鉴定及表达模式分析
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S641.2

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四川省高校重点实验室项目(GR-2017-E-03、GR-2018-C-01);金沙江干热河谷生态修复与治理创新研究团队专项经费项目(035200179);2020年攀枝花学院博士科研启动经费项目(035200254)


Identification and Expression Analysis of VOZ Gene in Solanum lycopersicum
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    摘要:

    VOZ蛋白是一类植物特有的转录因子,它在调控植物花发育和应对生物和非生物胁迫过程中发挥重要作用。本研究通过对番茄基因组的扫描共鉴定出2个SlVOZ基因,并采用生物信息学方法对核苷酸序列和蛋白质序列进行系统全面的分析,并研究了基因表达模式。蛋白质基本理化性质分析表明,它们都是酸性、不稳定、亲水非脂溶性蛋白质。基因结构分析显示,2个SlVOZ基因都是4个外显子和3个内含子的基因结构模式。蛋白质二级结构不同组分占比趋势相同,从高到低依次是无规则卷曲、α螺旋、延伸链、β折叠;蛋白质三级结构都具有相似的空间构象;氨基酸序列具有相同的5个基序,且基序的排布顺序同多重序列比对结果也一致。系统进化树显示,2个SlVOZ在进化关系上最近,且它们在单子叶植物和双子叶植物分化之前已经完成分化。这2个SlVOZ基因在不同的组织部位都有一定的表达,表明它们不具备组织表达特异性,然而基因的表达强弱受果实不同发育时期影响显著。本研究结果将为深入开展番茄SlVOZ基因相关的克隆和功能研究提供理论参考。

    Abstract:

    VOZ protein is a type of plant-specific transcription factor, which plays an important role in regulating plant flower development and responding to biotic and abiotic stresses. In this research, two SlVOZ genes were identified by scanning the tomato whole genome, and the nucleotide sequence and protein sequence were systematically and comprehensively analyzed using bioinformatics methods, and gene expression patterns were studied. Analysis of the basic physical and chemical properties of proteins shows that they are all acidic, unstable, hydrophilic and nonfat-soluble proteins. Gene structure analysis shows that the two SlVOZ genes are all gene structure patterns with 4exons and 3 introns. The different components of the protein secondary structure accounts for the same trend. From high to low, they are random coils, α helix, extended chain, and β sheet. Their tertiary structures of proteins all have similar spatial conformations. The amino acid sequence has the same 5 motifs, and the arrangement order of the motifs is also consistent with the multiple sequence alignment results. The phylogenetic tree shows that the two SlVOZs are the closest in evolutionary relationship, and they have completed differentiation before the differentiation of monocots and dicots. These two SlVOZ genes have certain expression in different tissue parts, indicating that they do not have tissue expression specificity, but the gene expression strength is significantly affected by the different developmental stages of the fruit. The results of this article will provide theoretical references for further research on the cloning and function of tomato SlVOZ genes.

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杨建红,巩元勇,赵丽华,闫飞.番茄(Solanum lycopersicumVOZ基因的鉴定及表达模式分析[J].东北农业科学,2023,48(6):76-82.

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  • 收稿日期:2021-02-08
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  • 在线发布日期: 2024-10-25
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